Jeraldo, Patricio R.: search on Z-Library

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1

An Increased Abundance of Clostridiaceae Characterizes Arthritis in Inflammatory Bowel Disease and Rheumatoid Arthritis: A Cross-sectional Study

Muñiz Pedrogo, David A, Chen, Jun, Hillmann, Benjamin, Jeraldo, Patricio, Al-Ghalith, Gabriel, Taneja, Veena, Davis, John M, Knights, Dan, Nelson, Heidi, Faubion, William A, Raffals, Laura, Kashyap, P

Journal:

Inflammatory Bowel Diseases

Year:

2018

Language:

english

File:

PDF, 417 KB

english, 2018

2

Evaluation of the CosmosID Bioinformatics Platform for Prosthetic Joint-Associated Sonicate Fluid Shotgun Metagenomic Data Analysis

Yan, Qun, Wi, Yu Mi, Thoendel, Matthew J., Raval, Yash S., Greenwood-Quaintance, Kerryl E., Abdel, Matt P., Jeraldo, Patricio R., Chia, Nicholas, Patel, Robin

Journal:

Journal of Clinical Microbiology

Year:

2018

Language:

english

File:

PDF, 782 KB

english, 2018

3

An expansion of rare lineage intestinal microbes characterizes rheumatoid arthritis

Chen, Jun, Wright, Kerry, Davis, John M., Jeraldo, Patricio, Marietta, Eric V., Murray, Joseph, Nelson, Heidi, Matteson, Eric L., Taneja, Veena

Journal:

Genome Medicine

Year:

2016

Language:

english

File:

PDF, 2.91 MB

english, 2016

4

Plasmid acquisition alters vancomycin susceptibility in Clostridioides difficile

Pu, Meng, Cho, Janice M., Cunningham, Scott A., Behera, Gaurav, Becker, Sarah, Amjad, Talal, Greenwood-Quaintance, Kerryl E., Mendes-Soares, Helena, Jones-Hall, Yava, Jeraldo, Patricio R., Chen, Jun,

Journal:

Gastroenterology

Year:

2020

File:

PDF, 14.63 MB

2020

5

Erratum to: Prolonged use of a proton pump inhibitor reduces microbial diversity: implications for Clostridium difficile susceptibility

Seto, Charlie T., Jeraldo, Patricio, Orenstein, Robert, Chia, Nicholas, DiBaise, John K.

Journal:

Year:

2016

Language:

english

File:

PDF, 336 KB

english, 2016

6

Impact of Contaminating DNA in Whole Genome Amplification Kits Used for Metagenomic Shotgun Sequencing for Infection Diagnosis

Thoendel, Matthew, Jeraldo, Patricio, Greenwood-Quaintance, Kerryl E., Yao, Janet, Chia, Nicholas, Hanssen, Arlen D., Abdel, Matthew P., Patel, Robin

Journal:

Journal of Clinical Microbiology

Year:

2017

Language:

english

File:

PDF, 586 KB

english, 2017

7

A Possible Novel Prosthetic Joint Infection Pathogen, Mycoplasma salivarium, Identified by Metagenomic Shotgun Sequencing

Thoendel, Matthew, Jeraldo, Patricio, Greenwood-Quaintance, Kerryl E., Chia, Nicholas, Abdel, Matthew P., Steckelberg, James M., Osmon, Douglas R., Patel, Robin

Journal:

Clinical Infectious Diseases

Year:

2017

Language:

english

File:

PDF, 451 KB

english, 2017

8

Robust Computational Analysis of rRNA Hypervariable Tag Datasets

Sipos, Maksim, Jeraldo, Patricio, Chia, Nicholas, Qu, Ani, Dhillon, A. Singh, Konkel, Michael E., Nelson, Karen E., White, Bryan A., Goldenfeld, Nigel, Poon, Art F. Y.

Journal:

Year:

2010

Language:

english

File:

PDF, 246 KB

english, 2010

9

Prolonged use of a proton pump inhibitor reduces microbial diversity: implications forClostridium difficilesusceptibility

Seto, Charlie T, Jeraldo, Patricio, Orenstein, Robert, Chia, Nicholas, DiBaise, John K

Journal:

Year:

2014

Language:

english

File:

PDF, 1.19 MB

english, 2014

10

Multiple sclerosis patients have a distinct gut microbiota compared to healthy controls

Chen, Jun, Chia, Nicholas, Kalari, Krishna R., Yao, Janet Z., Novotna, Martina, Soldan, M. Mateo Paz, Luckey, David H., Marietta, Eric V., Jeraldo, Patricio R., Chen, Xianfeng, Weinshenker, Brian G.,

Journal:

Scientific Reports

Year:

2016

Language:

english

File:

PDF, 1.95 MB

english, 2016

11

Capturing One of the Human Gut Microbiome’s Most Wanted: Reconstructing the Genome of a Novel Butyrate-Producing, Clostridial Scavenger from Metagenomic Sequence Data

Jeraldo, Patricio, Hernandez, Alvaro, Nielsen, Henrik B., Chen, Xianfeng, White, Bryan A., Goldenfeld, Nigel, Nelson, Heidi, Alhquist, David, Boardman, Lisa, Chia, Nicholas

Journal:

Frontiers in Microbiology

Year:

2016

Language:

english

File:

PDF, 1.04 MB

english, 2016

12

Pertussis Outbreak, Southeastern Minnesota, 2012

Theofiles, Alexander G., Cunningham, Scott A., Chia, Nicholas, Jeraldo, Patricio R., Quest, Daniel J., Mandrekar, Jayawant N., Patel, Robin

Journal:

Mayo Clinic Proceedings

Year:

2014

Language:

english

File:

PDF, 673 KB

english, 2014

13

Anisotropic velocity statistics of topological defects under shear flow

Angheluta, Luiza, Jeraldo, Patricio, Goldenfeld, Nigel

Journal:

Physical Review E

Year:

2012

Language:

english

File:

PDF, 1.42 MB

english, 2012

14

645 CLOSTRIDIOIDES DIFFICILE WHOLE GENOME SEQUENCING DIFFERENTIATES RELAPSE WITH THE SAME STRAIN FROM REINFECTION WITH A NEW STRAIN

Cho, Janice, Cunningham, Scott A., Lennon, Ryan J., Pu, Meng, Higano, Jennifer Dens, Jeraldo, Patricio, Sampathkumar, Priya, Shannon, Samantha, Patel, Robin, Kashyap, Purna

Journal:

Gastroenterology

Year:

2020

File:

PDF, 390 KB

2020

15

On the suitability of short reads of 16S rRNA for phylogeny-based analyses in environmental surveys

Patricio Jeraldo, Nicholas Chia, Nigel Goldenfeld

Journal:

Environmental Microbiology

Year:

2011

Language:

english

File:

PDF, 788 KB

english, 2011

16

Draft Genome Sequences of 24 Microbial Strains Assembled from Direct Sequencing from 4 Stool Samples: TABLE 1

Jeraldo, Patricio, Hernández, Álvaro, White, Bryan A., O’Brien, Daniel, Ahlquist, David, Boardman, Lisa, Chia, Nicholas

Journal:

Genome Announcements

Year:

2015

Language:

english

File:

PDF, 165 KB

english, 2015

17

Systematic Bias Introduced by Genomic DNA Template Dilution in 16S rRNA Gene-Targeted Microbiota Profiling in Human Stool Homogenates

Multinu, Francesco, Harrington, Sean C., Chen, Jun, Jeraldo, Patricio R., Johnson, Stephen, Chia, Nicholas, Walther-Antonio, Marina R., Frank, Carolin

Journal:

Year:

2018

Language:

english

File:

PDF, 1.82 MB

english, 2018

18

Identification of Prosthetic Joint Pathogens Directly in Clinical Specimens by Metagenomic Shotgun Sequencing

Thoendel, Matthew, Jeraldo, Patricio, Greenwood-Quaintance, Kerryl, Yao, Janet, Abdel, Matthew, Chia, Nicholas, Patel, Robin, Hanssen, Arlen D.

Journal:

Open Forum Infectious Diseases

Year:

2016

Language:

english

File:

PDF, 33 KB

english, 2016

19

Hybrid-denovo: A de novo OTU-picking pipeline integrating single-end and paired-end 16S sequence tags

Chen, Xianfeng, Johnson, Stephen, Jeraldo, Patricio, Wang, Junwen, Chia, Nicholas, Kocher, Jean-Pierre A, Chen, Jun

Journal:

Year:

2017

Language:

english

File:

PDF, 1.56 MB

english, 2017

20

Diet and exercise orthogonally alter the gut microbiome and reveal independent associations with anxiety and cognition

Kang, Silvia S, Jeraldo, Patricio R, Kurti, Aishe, Miller, Margret E, Cook, Marc D, Whitlock, Keith, Goldenfeld, Nigel, Woods, Jeffrey A, White, Bryan A, Chia, Nicholas, Fryer, John D

Journal:

Molecular Neurodegeneration

Year:

2014

Language:

english

File:

PDF, 1.58 MB

english, 2014

21

Metronidazole- and Carbapenem-Resistant Bacteroides thetaiotaomicron Isolated in Rochester, Minnesota, in 2014

Sadarangani, Sapna P., Cunningham, Scott A., Jeraldo, Patricio R., Wilson, John W., Khare, Reeti, Patel, Robin

Journal:

Antimicrobial Agents and Chemotherapy

Year:

2015

Language:

english

File:

PDF, 299 KB

english, 2015

22

Correction for Hasassri et al., An Immunocompromised Child with Bloodstream Infection Caused by Two Escherichia coli Strains, One Harboring NDM-5 and the Other Harboring OXA-48-Like Carbapenemase

Hasassri, M. Earth, Boyce, Thomas G., Norgan, Andrew P., Cunningham, Scott A., Jeraldo, Patricio R., Weissman, Scott J., Patel, Robin, Banerjee, Ritu, Pogue, Jason M., Kaye, Keith S.

Journal:

Antimicrobial Agents and Chemotherapy

Year:

2016

Language:

english

File:

PDF, 130 KB

english, 2016

23

[IEEE 2017 IEEE International Symposium on Medical Measurements and Applications (MeMeA) - Rochester, MN, USA (2017.5.7-2017.5.10)] 2017 IEEE International Symposium on Medical Measurements and Applications (MeMeA) - Experimental validation of an optofluidic platform for microbial single cell isolation and whole genome amplification for human microbiome applications

Liu, Yuguang, Jeraldo, Patricio, McDonough, Samantha, Jen, Jin, Patel, Robin, Walther-Antonio, Marina, Lambert, Christopher, Gale, Bruce

Year:

2017

Language:

english

File:

PDF, 3.71 MB

english, 2017

24

Carbapenem- and Colistin-Resistant Enterobacter cloacae , Delta, Colorado, 2015

Norgan, Andrew P., Freese, Jarred M., Tuin, Patricia M., Cunningham, Scott A., Jeraldo, Patricio R., Patel, Robin

Journal:

Antimicrobial Agents and Chemotherapy

Year:

2016

Language:

english

File:

PDF, 452 KB

english, 2016

25

Comparison of Two Whole-Genome Sequencing Methods for Analysis of Three Methicillin-Resistant Staphylococcus aureus Outbreaks

Cunningham, Scott A., Chia, Nicholas, Jeraldo, Patricio R., Quest, Daniel J., Johnson, Julie A., Boxrud, Dave J., Taylor, Angela J., Chen, Jun, Jenkins, Gregory D., Drucker, Travis M., Nelson, Heidi,

Journal:

Journal of Clinical Microbiology

Year:

2017

Language:

english

File:

PDF, 466 KB

english, 2017

26

Application of metagenomic shotgun sequencing to detect vector-borne pathogens in clinical blood samples

Vijayvargiya, Prakhar, Jeraldo, Patricio R., Thoendel, Matthew J., Greenwood-Quaintance, Kerryl E., Esquer Garrigos, Zerelda, Sohail, M. Rizwan, Chia, Nicholas, Pritt, Bobbi S., Patel, Robin, Dumler,

Journal:

Year:

2019

Language:

english

File:

PDF, 1.15 MB

english, 2019

27

Core genome MLST and Resistome analysis of Klebsiella pneumoniae using a clinically-amenable workflow

Fida, Madiha, Cunningham, Scott A, Murphy, Matthew P, Bonomo, Robert A, Hujer, Kristine M, Hujer, Andrea M, Kreiswirth, Barry N, Chia, Nicholas, Jeraldo, Patricio R, Nelson, Heidi, Zinsmaster, Nicole

Journal:

Diagnostic Microbiology and Infectious Disease

Year:

2020

Language:

english

File:

PDF, 2.70 MB

english, 2020

28

Lack of correlation of virulence gene profiles of Staphylococcus aureus bacteremia isolates with mortality

Park, Kyung-Hwa, Greenwood-Quaintance, Kerryl E., Cunningham, Scott A., Rajagopalan, Govindarajan, Chia, Nicholas, Jeraldo, Patricio R., Mandrekar, Jayawant, Patel, Robin

Journal:

Microbial Pathogenesis

Year:

2019

Language:

english

File:

PDF, 814 KB

english, 2019

29

The microbiome of the chicken gastrointestinal tract

Yeoman, Carl J., Chia, Nicholas, Jeraldo, Patricio, Sipos, Maksim, Goldenfeld, Nigel D., White, Bryan A.

Journal:

Animal Health Research Reviews

Year:

2012

Language:

english

File:

PDF, 381 KB

english, 2012

30

Prophylactic Fecal Microbial Transplant Restores Clostridium Difficile Colonization Resistance in a Dysbiotic Subset of Diarrhea Associated Human Microbial Communities Modeled in Germ Free Mice

Battaglioli, Eric, Hale, Vanessa, Chen, Jun, Jeraldo, Patricio, Rekdal, Vayu Maini, Huq, Lutfi, Smits, Samuel A., Smyrk, Thomas, Khanna, Sahil, Pardi, Darrell S., Grover, Madhusudan, Patel, Robin, Nel

Journal:

Gastroenterology

Year:

2017

Language:

english

File:

PDF, 485 KB

english, 2017

31

IM-TORNADO: A Tool for Comparison of 16S Reads from Paired-End Libraries

Jeraldo, Patricio, Kalari, Krishna, Chen, Xianfeng, Bhavsar, Jaysheel, Mangalam, Ashutosh, White, Bryan, Nelson, Heidi, Kocher, Jean-Pierre, Chia, Nicholas, Janssen, Paul Jaak

Journal:

Year:

2014

Language:

english

File:

PDF, 845 KB

english, 2014

32

Comparison of Three Commercial Tools for Metagenomic Shotgun Sequencing Analysis

Thoendel, Matthew, Jeraldo, Patricio, Greenwood-Quaintance, Kerryl E., Yao, Janet, Chia, Nicholas, Hanssen, Arlen D., Abdel, Matthew P., Patel, Robin, Mellmann, Alexander

Journal:

Journal of Clinical Microbiology

Year:

2019

File:

PDF, 237 KB

2019

33

Comparison of microbial DNA enrichment tools for metagenomic whole genome sequencing

Thoendel, Matthew, Jeraldo, Patricio R., Greenwood-Quaintance, Kerryl E., Yao, Janet Z., Chia, Nicholas, Hanssen, Arlen D., Abdel, Matthew P., Patel, Robin

Journal:

Journal of Microbiological Methods

Year:

2016

Language:

english

File:

PDF, 614 KB

english, 2016

34

Synthesis of multi-omic data and community metabolic models reveals insights into the role of hydrogen sulfide in colon cancer

Hale, Vanessa L., Jeraldo, Patricio, Mundy, Michael, Yao, Janet, Keeney, Gary, Scott, Nancy, Cheek, E. Heidi, Davidson, Jennifer, Green, Megan, Martinez, Christine, Lehman, John, Pettry, Chandra, Reed

Journal:

Year:

2018

Language:

english

File:

PDF, 1.30 MB

english, 2018

35

Direct Detection and Identification of Prosthetic Joint Infection Pathogens in Synovial Fluid by Metagenomic Shotgun Sequencing

Ivy, Morgan I., Thoendel, Matthew J., Jeraldo, Patricio R., Greenwood-Quaintance, Kerryl E., Hanssen, Arlen D., Abdel, Matthew P., Chia, Nicholas, Yao, Janet Z., Tande, Aaron J., Mandrekar, Jayawant N

Journal:

Journal of Clinical Microbiology

Year:

2018

Language:

english

File:

PDF, 835 KB

english, 2018

36

Clostridioides difficile uses amino acids associated with gut microbial dysbiosis in a subset of patients with diarrhea

Battaglioli, Eric J., Hale, Vanessa L., Chen, Jun, Jeraldo, Patricio, Ruiz-Mojica, Coral, Schmidt, Bradley A., Rekdal, Vayu M., Till, Lisa M., Huq, Lutfi, Smits, Samuel A., Moor, William J., Jones-Hal

Journal:

Science Translational Medicine

Year:

2018

Language:

english

File:

PDF, 2.58 MB

english, 2018

37

Draft Genome Sequences of Nine Pseudomonas aeruginosa Strains, Including Eight Clinical Isolates: TABLE 1

Jeraldo, Patricio, Cunningham, Scott A., Quest, Daniel, Sikkink, Robert A., O’Brien, Daniel, Eckloff, Bruce W., Patel, Robin, Chia, Nicholas

Journal:

Genome Announcements

Year:

2015

Language:

english

File:

PDF, 164 KB

english, 2015

38

Molecular epidemiology of Staphylococcus aureus bacteremia in a single large Minnesota medical center in 2015 as assessed using MLST, core genome MLST and spa typing

Park, Kyung-Hwa, Greenwood-Quaintance, Kerryl E., Uhl, James R., Cunningham, Scott A., Chia, Nicholas, Jeraldo, Patricio R., Sampathkumar, Priya, Nelson, Heidi, Patel, Robin, de Lencastre, Herminia

Journal:

Year:

2017

Language:

english

File:

PDF, 2.46 MB

english, 2017

39

Clostridioides difficile Whole Genome Sequencing Differentiates Relapse with the Same Strain from Reinfection with a New Strain

Cho, Janice, Cunningham, Scott, Pu, Meng, Lennon, Ryan J, Dens Higano, Jennifer, Jeraldo, Patricio, Sampathkumar, Priya, Shannon, Samantha, Kashyap, Purna, Patel, Robin

Journal:

Clinical Infectious Diseases

Year:

2020

File:

PDF, 730 KB

2020

40

Bacterial Single Cell Whole Transcriptome Amplification in Microfluidic Platform Shows Putative Gene Expression Heterogeneity

Liu, Yuguang, Jeraldo, Patricio, Jang, Jinsung, Eckloff, Bruce, Jen, Jin, Walther-Antonio, Marina

Journal:

Analytical Chemistry

Year:

2019

Language:

english

File:

PDF, 1.09 MB

english, 2019

41

Human Gut-Derived Prevotella histicola Suppresses Inflammatory Arthritis in Humanized Mice

Marietta, Eric V., Murray, Joseph A., Luckey, David H., Jeraldo, Patricio R., Lamba, Abhinav, Patel, Robin, Luthra, Harvinder S., Mangalam, Ashutosh, Taneja, Veena

Journal:

Arthritis & Rheumatology

Year:

2016

Language:

english

File:

PDF, 1.71 MB

english, 2016

42

Direct Detection and Identification of Prosthetic Joint Pathogens in Synovial Fluid (SF) by Metagenomic Shotgun Sequencing

Ivy, Morgan, Thoendel, Matthew, Jeraldo, Patricio, Greenwood-Quaintance, Kerryl, Hanssen, Arlen D, Abdel, Matthew, Chia, Nicholas, Yao, Janet, Tande, Aaron, Mandrekar, Jayawant, Patel, Robin

Journal:

Open Forum Infectious Diseases

Year:

2017

Language:

english

File:

PDF, 251 KB

english, 2017

43

Erratum for Norgan et al., Carbapenem- and Colistin-Resistant Enterobacter cloacae from Delta, Colorado, in 2015: TABLE 2

Norgan, Andrew P., Freese, Jarred M., Tuin, Patricia M., Cunningham, Scott A., Jeraldo, Patricio R., Patel, Robin

Journal:

Antimicrobial Agents and Chemotherapy

Year:

2016

Language:

english

File:

PDF, 137 KB

english, 2016

44

Individualized medicine and the microbiome in reproductive tract

Braundmeier, Andrea G., Lenz, Katherine M., Inman, Kristin S., Chia, Nicholas, Jeraldo, Patricio, Walther-AntÃ³nio, Marina R. S., Berg Miller, Margret E., Yang, Fang, Creedon, Douglas J., Nelson, Heid

Journal:

Frontiers in Physiology

Year:

2015

Language:

english

File:

PDF, 294 KB

english, 2015

45

Distinct microbes, metabolites, and ecologies define the microbiome in deficient and proficient mismatch repair colorectal cancers

Hale, Vanessa L., Jeraldo, Patricio, Chen, Jun, Mundy, Michael, Yao, Janet, Priya, Sambhawa, Keeney, Gary, Lyke, Kelly, Ridlon, Jason, White, Bryan A., French, Amy J., Thibodeau, Stephen N., Diener, C

Journal:

Genome Medicine

Year:

2018

Language:

english

File:

PDF, 10.28 MB

english, 2018

46

An Immunocompromised Child with Bloodstream Infection Caused by Two Escherichia coli Strains, One Harboring NDM-5 and the Other Harboring OXA-48-Like Carbapenemase

Hasassri, M. Earth, Boyce, Thomas G., Norgan, Andrew, Cunningham, Scott A., Jeraldo, Patricio R., Weissman, Scott, Patel, Robin, Banerjee, Ritu, Pogue, Jason M., Kaye, Keith S.

Journal:

Antimicrobial Agents and Chemotherapy

Year:

2016

Language:

english

File:

PDF, 470 KB

english, 2016

47

Identification of Prosthetic Joint Infection Pathogens Using a Shotgun Metagenomics Approach

Thoendel, Matthew, Jeraldo, Patricio, Greenwood-Quaintance, Kerryl E, Yao, Janet, Chia, Nicholas, Hanssen, Arlen D, Abdel, Matthew P, Patel, Robin

Journal:

Clinical Infectious Diseases

Year:

2018

Language:

english

File:

PDF, 455 KB

english, 2018

48

Mo1934 - Gut Microbial Markers of Arthritis Including Inflammatory Bowel Disease Associated Arthropathy

Muniz-Pedrogo, David A., Chen, Jun, Hillmann, Benjamin M., Jeraldo, Patricio, Saffouri, George, Al-Ghalith, Gabriel A., Friton, Jessica, Taneja, Veena, Davis, John M., Knights, Dan, Nelson, Heidi, Fau

Journal:

Gastroenterology

Year:

2018

Language:

english

File:

PDF, 499 KB

english, 2018

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